cloudSPAdes

Description

cloudSPAdes is a module of the SPAdes assembler aimed at genome assembly from the data generated using Synthetic Long Read (SLR) technologies, such as 10X Genomics Chromium or UST TELL-Seq.

Availability

cloudSPAdes will be available soon as a part of SPAdes package. For now one can download, build, and try pre-release version of SPAdes package including cloudSPAdes.

Support

If you have a problem running SPAdes you can look for a similar issue on our GitHub repository, create a new one or write us via e-mail: .

Publications

  2. Tolstoganov I. , Pevzner P. A. cloudSPAdes: Assembly of Synthetic Long Reads Using de Bruijn graphs (talk), 2019
  3. Korobeynikov A. Tools for assembly graph analysis via SPAdes toolbox and more (talk), 2019