Description

Assembly Graph Browser (AGB) tool provides interactive visualization of assembly graphs, a wide range of tuning parameters, and various options for modifying/simplifying the graph. AGB includes a number of novel functions including repeat analysis, construction of the contracted assembly graphs (i.e. the graphs obtained by collapsing a selected set of edges) and a new approach to visualizing large assembly graphs. A more detailed description can be found in our AGB paper. Interactive AGB examples can be found here.

Availability

AGB is available as a conda package and on the GitHub.

Contact

In case of any questions, suggestions, bug reports, please write directly to Alla Mikheenko.