ISMB 2020 (Virtual, July 13-16)

  • Tatiana Dvorkina , Andrey V Bzikadze, Pavel A Pevzner The String Decomposition problem and its applications to centromere analysis and assembly (talk), 2020
  • Alla Mikheenko , Andrey V Bzikadze, Alexey Gurevich , Karen H Miga, Pavel A Pevzner TandemTools: mapping long reads and assessing/improving assembly quality in extra-long tandem repeats (talk), 2020
  • Andrey D Prjibelski , Alla Mikheenko , Anoushka Joglekar, Dmitry Meleshko , Alla L Lapidus , Hagen Tilgner IsoQuant: isoform analysis and quantification with long error-prone transcriptomic reads (talk), 2020

Genome Science 2019 (Edinburgh, Great Britain, September 3-5)

  • Korobeynikov A. Tools for assembly graph analysis via SPAdes toolbox and more (talk), 2019

MCCMB 2019 (Moscow, Russia, July 28-30)

  • Antipov D. , Rayko M. , Lapidus A. L. , Korobeynikov A. metaplasmidSPAdes: Plasmid Detection and Assembly in Genomic and Metagenomic Datasets (talk), 2019
  • Prjibelski A. , Meleshko D. Transcriptome assembly with spISO-seq data (talk), 2019

SFAF 2019 (Santa Fe, USA, May 21-23)

  • Shlemov A. , Dvorkina T. , Antipov D. , Nurk S. , Korobeynikov A. Tools for assembly graph analysis via SPAdes toolbox and more (talk), 2019
  • Antipov D. , Bushmanova E. , Dvorkina T. , Gurevich A. , Kunyavskaya O. , Shlemov A., Lapidus A. , Meleshko D. , Nurk S. , Prjibelski A. , Korobeynikov A. SPAdes Family of Tools for Genome Assembly and Analysis (poster), 2019

AlCoB 2019 (Berkeley, USA, May 28-30)

  • Shlemov A., Korobeynikov A. PathRacer: racing profile HMM paths on assembly graph (talk), 2019

RECOMB-Seq 2019 (Washington DC, USA, May 3-4)

  • Shlemov A., Korobeynikov A. PathRacer: racing profile HMM paths on assembly graph (talk), 2019

ISMB/ECCB 2019 (Bazel, Switzerland, July 21-25)

  • Tolstoganov I. , Pevzner P. A. cloudSPAdes: Assembly of Synthetic Long Reads Using de Bruijn graphs (talk), 2019
  • Tagirdzhanov A. , Shlemov A., Gurevich A. NPS: scoring and evaluating the statistical significance of peptidic natural product–spectrum matches (talk, poster), 2019
  • Shlemov A., Korobeynikov A. PathRacer: racing profile HMM paths on assembly graph (poster), 2019

8-th ASM Conference on Rapid Applied Microbial Next-Generation Sequencing and Bioinformatic Pipelines (Washnigton, DC, USA, September 23-26)

  • Antipov D. Plasmid Detection and Assembly in Genomic and Metagenomic Datasets (talk), 2018

ISMB 2018 (Chicago, USA, July 7-10)

  • Mikheenko A. , Prjibelski A. , Saveliev V. , Antipov D. , Gurevich A. Versatile genome assembly evaluation with QUAST-LG (talk, poster), 2018

ICCPP 2018 (Kawasaki, Japan, November 28-30)

  • Gurevich A. , Mikheenko A. , Shlemov A. , Korobeynikov A. , Pevzner P. A. Variable Identification and De Novo Sequencing of Cyclopeptides via Computational Processing of Tandem Mass Spectra (talk), 2018

NGSchool2018 (Lublin, Poland, September 16-23)

  • Prjibelski A. Algorithms for nucleic sequence alignment (talk), 2018

SFAF 2018 (Santa Fe, USA, May 22-24)

  • Korobeynikov A. , Antipov D. , Bushmanova E. , Gurevich A. , Lapidus A. L. , Meleshko D. , Mikheenko A. , Nurk S. , Prjibelski A. , and Pevzner P. A. SPAdes Family of Tools for Genome Assembly and Analysis: Current Status (poster), 2018
  • Lapidus A. L. Center for Algorithmic Biotechnology of St. Petersburg State University and the smart programs that help with data analysis (talk), 2018

AGBT 2018 (Orlando, USA, February 12-15)

  • Korobeynikov A. , Antipov D. , Bushmanova E. , Gurevich A. , Lapidus A. , Meleshko D. , Mikheenko A. , Nurk S. , Prjibelski A. , Pevzner P. A. SPAdes Family of Tools for Genome Assembly and Analysis: What’s New? (poster), 2018

RCAM 2018 (Athens, Greece, September 9)

  • Korobeynikov A. Challenges of metagenome assemblies: how to deal with them and how to live with them? (talk), 2018

RECOMB 2018 (Paris, France, April 18-25)

  • Bankevich A. Long Reads Enable Accurate Estimates Of Complexity Of Metagenomes (talk), 2018

ISMB / ECCB 2017 (Prague, Czech Republic, July, 21-25)

  • Gurevich A. , Shlemov A., Mikheenko A. , Korobeynikov A. , Pevzner P. A. VarQuest: modification-tolerant identification of novel variants of peptidic antibiotics and other natural products. (poster), 2017
  • Gurevich A. , Shlemov A., Mikheenko A. , Korobeynikov A. , Pevzner P. A. Identification of novel peptidic antibiotics via large scale scoring of mass spectra against natural products databases (poster), 2017
  • Savelyev V. ClearUp: sample identity validation in NGS data (poster), 2017

CAMI + M3 Workshop (College Park, USA, May 7-8)

  • Nurk S. Past, present and future of metaSPAdes metagenomic assembler (talk), 2017

BiATA 2017 (St. Petersburg, Russia, August 1-3)

  • Korobeynikov A. SPAdes Toolbox (tallk), 2017
  • Bzikadze A. Immunoinformatics: Immunology meets Computing (talk), 2017
  • Gurevich A. Genome assembly evaluation with QUAST (talk), 2017
  • Pevzner P. A. From Metagenome Sequencing to Genome Mining for New Antibiotics (talk), 2017
  • Nurk S. Assembly of metagenomic (series) data with SPAdes instruments (talk), 2017
  • Tolstoganov I. Metagenome assembly from synthetic long reads using de Bruijn graphs (talk), 2017
  • Prjibelski A. , Antipov D. , Bushmanova E. Algorithmic challenges in de novo transcriptome and metatranscriptome assembly (talk), 2017

WABI 2017 (Boston, USA, August 21-23)

  • Korobeynikov A. , Abramova A. Assessing Significance of Peptide Spectrum Match Scores (talk), 2017

AGBT 2017 (Miami, Florida, USA, February 13-16)

  • Korobeynikov A. , Antipov D. , Bankevich A. , Bushmanova E. , Gurevich A. , Lapidus A. , Meleshko D. , Nurk S. , Prjibelski A. , Pevzner P. A. SPAdes Family of Tools for Genome Assembly and Analysis: What’s New? (poster), 2017

SFAF 2017 (Santa Fe, USA, May, 16-18)

  • Korobeynikov A. , Antipov D. , Bankevich A. , Bushmanova E. , Lapidus A. , Meleshko D. , Nurk S. , Prjibelski A. , Pevzner P. A. SPAdes: is there anything new we could develop? (talk), 2017
  • Lapidus A. , Antipov D. , Bankevich A. , Bushmanova E. , Korobeynikov A. , Meleshko D. , Nurk S. , Prjibelski A. , Pevzner P. A. SPAdes Family of Tools for Genome Assembly and Analysis: What’s New? (poster), 2017
  • Korobeynikov A. , Shlemov A., Bzikadze A. Accurate targeted assembly and variant calling from NanoString Hyb & Seq data (poster), 2017

The 65th ASMS Conference on Mass Spectrometry and Allied Topics (Indianapolis, IN, USA, June 4-8)

  • K. Vyatkina , J. Shaw, L. Paša-Tolić De novo sequencing of proteins by top-down 193 nm ultraviolet photodissociation mass spectrometry (poster), 2017

RECOMB 2017 (Hong Kong, China, May 3-7)

  • Bankevich S. , Shlemov A., Safonova Y., Bzikadze A. , Pevzner P. A. Reconstructing antibody repertoires from error-prone immunosequencing datasets (talk), 2017
  • Shlemov A., Bankevich S. , Safonova Y., Bzikadze A. , Pevzner P. A. Identification of novel peptidic antibiotics via large scale scoring of mass spectra against natural products databases (poster), 2017
  • Bzikadze A. , Shlemov A., Bankevich S. , Safonova Y., Pevzner P. A. AntEvolo: a novel approach for clonal analysis of antibody repertoires (poster), 2017

RECOMB & RECOMB­Seq 2016 (Sa​nta Monica, USA​)

Immunogenomics 2015 (​Huntsville, USA​)

ISMB/ECCB 2015 (​Dublin, Ireland​)

The Annual DOE JGI User Meeting (Walnut Creek, USA, March 18-20, 2014)

  • Lapidus A., Antipov D., Bankevich A., Gurevich A., Korobeynikov A., Nurk S., Prjibelski A., Safonova Y., Vasilinetc I., Pevzner P. A. New Frontiers of Genome Assembly with SPAdes 3.0. (poster), 2014

RECOMB 2014 (Pittsburgh, USA)

  • Safonova Y., Bankevich A., Pevzner P. A. dipSPAdes: assembler for highly polymorphic diploid genomes. Talk., 2014

APBC 2013 (Vancouver, Canada, January 21-23, 2013)

RECOMB 2013 (Beijing, China, April 7-10, 2013)

  • Nurk S., Bankevich A., Antipov D., Gurevich A., Korobeynikov A., Lapidus A., Prjibelski A., Pyshkin A., Sirotkin A., Sirotkin Y., Stepanauskas R., McLean J., Lasken R., Clingenpeel S., Woyke T., Tesler G., Alekseyev M. A., Pevzner P. A. Assembling Genomes and Mini-metagenomes from Highly Chimeric Reads. Lecture Notes in Computer Science, 2013
  • Safonova Y., Kondrashov A., Logacheva M., Penin A., Bankevich A. NGS assembly of highly polymorphic diploid genomes. , 2013
  • Antipov D., Krasheninnikova K., Pevzner P. A. Using uneven coverage depth in bacterial single-cell repeat resolution. (poster), 2013
  • Gurevich A., Saveliev V., Vyahhi N., Tesler G. Quality assessment of genome assemblies (web tool). (poster), 2013

8th Joint Meeting of AFERP, ASP, GA, PSE and SIF (New York City, July 28 - August 1, 2012)

RECOMB CP 2012 (San Diego, CA, USA, April 6-8, 2012)

  • Sirotkin Y., Liu X., Gladkikh M., Pevzner P. A., Vyatkina K. Peptide Sequence Tags for Top-Down Spectra. (talk), 2012

RECOMB 2012 (Barcelona, Spain, April 21-24, 2012)

  • Pham S., Antipov D., Sirotkin A., Tesler G., Pevzner P. A., Alekseyev M. A. Pathset Graphs: A Novel Approach for Comprehensive Utilization of Mate-Pairs in Genome Assembly. Lecture Notes in Computer Science, 2012

The 60th ASMS Annual Conference on Mass Spectrometry and Allied Topics (Vancouver, Canada, May 21-24, 2012)

  • Sirotkin Y., Liu X., Gladkikh M., Pevzner P. A., Vyatkina K. Peptide Sequence Tags for Top-Down Spectra. (poster, session TP25), 2012

CSR 2012 (Nizhni Novgorod, Russia, July 21-24, 2012)

  • Alekseyev M. A. Challenges in Comparative Genomics: from Biological Problems to Combinatorial Algorithms (and back). (talk), 2012

WABI 2012 (Ljubljana, Slovenia, September 10-12, 2012)

  • Vyahhi N., Pyshkin A., Pham S., Pevzner P. A. From de Bruijn Graphs to Rectangle Graphs for Genome Assembly. Lecture Notes in Bioinformatics, 2012
  • Minkin I., Vyahhi N., Pham S. SyntenyFinder: A Synteny Blocks Generation and Genome Comparison Tool. , 2012
  • Prjibelski A., Krivosheeva T., Bankevich A., Nurk S., Pham S., Pevzner P. A. Path-Extend: An Approach for Repeat Resolution in de novo Genome Assembly. , 2012

RECOMB-CG 2012 (Niterói, Brazil, October 17-19, 2012)

ISMB 2011 (Vienna, Austria, July 15-19, 2011)

  • Alekseyev M. A., Pevzner P. A. The Birth and Death of Fragile Regions in Human Genome. (highlight track paper), 2011
  • Dvorkin M., Kulikov A., Alekseyev M. A. Earmark Graph Approach to de novo genome assembly. (poster), 2011
  • Nikolenko S., Alekseyev M. A., Pevzner P. A. Bayesian Evaluation of de novo Genome Assembly. (poster), 2011
  • Nikolenko S., Nurk S., Bankevich A., Alekseyev M. A., Pevzner P. A. Expandable de novo genome assembler for short-read sequence data. (HiTSeq poster), 2011
  • Liu X., Sirotkin Y., Shen Y., Anderson G., Tsai Y. S., Ting Y. S., Goodlett D. R., Smith R. D., Bafna V., Pevzner P. A. Protein Identification Using Top-Down Spectra. (poster), 2011

RECOMB 2011 (Vancouver, Canada, March 28-31, 2011)

  • Mohimani H., Liu W. T., Yang Y. L., Gaudencio S., Fenical W., Dorrestein P., Pevzner P. A. Multiplex De Novo Sequencing of Peptide Antibiotics. (paper, talk), 2011
  • Ng J., Amir A., Pevzner P. A. Blocked Pattern Matching Problem and its Applications in Proteomics. (paper, talk), 2011
  • Medvedev P., Pham S., Chaisson M., Tesler G., Pevzner P. A. Paired de Bruijn graphs: a novel approach for incorporating mate pair information into genome assemblers. (paper, talk), 2011
  • Jiang S., Alekseyev M. A. Weighted genomic distance can hardly impose a bound on the proportion of transpositions. (paper, talk), 2011

POSTGENOME 2011 (Novosibirsk, Russia, November 14-17, 2011)

  • Alekseyev M. A. SPAdes: новый ассемблер геномов с поддержкой одноклеточного секвенирования. (talk), 2011

G10K Genome Assembly Workshop 2011 (Santa Cruz, USA, March 14-16, 2011)

  • Pevzner P. A. How Will the Human Genome Evolve in the Next Million Years? (talk), 2011

MCCMB 2011 (Moscow, Russia, July 21-24, 2011)

  • Sirotkin Y. Visualization of the MS-Align algorithm results for the protein spectrum matches. (demo), 2011
  • Nikolenko S. Hammer 2.0: Bayesian error correction for non-uniform coverage. (talk), 2011
  • Alekseyev M. A. Challenges in Comparative Genomics: from biological problems to combinatorial algorithms (and back). (talk), 2011
  • Pevzner P. A. De novo sequencing of peptide antibiotics. (talk), 2011