Yana Safonova

Junior Research Fellow

Publications

  1. Bzikadze A. , Shlemov A., Bankevich S. , Safonova Y., Pevzner P. A. AntEvolo: a novel approach for clonal analysis of antibody repertoires (poster), 2017
  2. Shlemov A., Bankevich S. , Safonova Y., Bzikadze A. , Pevzner P. A. Identification of novel peptidic antibiotics via large scale scoring of mass spectra against natural products databases (poster), 2017
  3. Bankevich S. , Shlemov A., Safonova Y., Bzikadze A. , Pevzner P. A. Reconstructing antibody repertoires from error-prone immunosequencing datasets (talk), 2017
  4. Safonova Y., Shlemov A., Bzikadze A., Bankevich S., Pevzner P. A. A novel toolkit for analysis of adaptive immune repertoires using immunosequencing and mass spectra data. Poster., 2016
  5. Shlemov A., Bzikadze A., Bankevich S., Safonova Y. IgReC 2.0: New algorithmic challenges of adaptive immune repertoire construction. Proceedings of RECOMB­Seq, 2016
  6. Safonova Y. IgRepertoireConstructor: a novel algorithm for antibody repertoire construction and immunoproteogenomics analysis. Talk on ISMB/ECCB 2015. Dublin, Ireland., 2015
  7. Safonova Y., Bankevich A., Pevzner P. A. dipSPAdes: assembler for highly polymorphic diploid genomes. In Sharan, Roded (eds.) RECOMB 2014, LNCS (8394). pp. 265-279. Springer, Heidelberg, 2014
  8. Safonova Y., Bankevich A., Pevzner P. A. dipSPAdes: assembler for highly polymorphic diploid genomes. Talk., 2014
  9. Lapidus A., Antipov D., Bankevich A., Gurevich A., Korobeynikov A., Nurk S., Prjibelski A., Safonova Y., Vasilinetc I., Pevzner P. A. New Frontiers of Genome Assembly with SPAdes 3.0. (poster), 2014
  10. Safonova Y., Kondrashov A., Logacheva M., Penin A., Bankevich A. NGS assembly of highly polymorphic diploid genomes. , 2013