
Yana Safonova
Junior Research Fellow
Publications
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Reconstructing Antibody Repertoires from Error-Prone Immunosequencing Reads. The Journal of Immunology, 2017 -
Reconstructing antibody repertoires from error-prone immunosequencing datasets (talk), 2017 -
Identification of novel peptidic antibiotics via large scale scoring of mass spectra against natural products databases (poster), 2017 -
AntEvolo: a novel approach for clonal analysis of antibody repertoires (poster), 2017 -
IgReC 2.0: New algorithmic challenges of adaptive immune repertoire construction. Proceedings of RECOMBSeq, 2016 -
A novel toolkit for analysis of adaptive immune repertoires using immunosequencing and mass spectra data. Poster., 2016 -
IgRepertoireConstructor: a novel algorithm for antibody repertoire construction and immunoproteogenomics analysis. Bioinformatics, 2015 -
IgSimulator: a versatile immunosequencing simulator. Bioinformatics, 2015 -
Extraordinary Genetic Diversity in a Wood Decay Mushroom. Mol Biol Evol., 2015 -
dipSPAdes: assembler for highly polymorphic diploid genomes. Journal of Computational Biology, 2015 -
IgTools: a toolkit for analysis of antibody repertoire from immunosequencing and mass spectra data. Poster on Immunogenomics 2015. Huntsville, USA, 2015 -
IgRepertoireConstructor: a novel algorithm for antibody repertoire construction and immunoproteogenomics analysis. Talk on ISMB/ECCB 2015. Dublin, Ireland., 2015 -
IgTools: a toolkit for construction of antibody repertoire using immunosequencing data. Poster on ISMB/ECCB 2015. Dublin, Ireland, 2015 -
New Frontiers of Genome Assembly with SPAdes 3.0. (poster), 2014 -
dipSPAdes: assembler for highly polymorphic diploid genomes. In Sharan, Roded (eds.) RECOMB 2014, LNCS (8394). pp. 265-279. Springer, Heidelberg, 2014 -
dipSPAdes: assembler for highly polymorphic diploid genomes. Talk., 2014 -
NGS assembly of highly polymorphic diploid genomes. , 2013