Sergey Nurk

Junior Research Fellow

Education:

Presently finishing my PhD under the supervision of Pavel A. Pevzner.
In 2011 graduated (with honors) from the faculty of Mathematics and Mechanics of Saint-Petersburg State University (Department of Software Engineering)

Scientific interests:

Genome Assembly, Metagenomics, Computational Genomics, Bioinformatics, Software Design, Algorithms Design, Data Analysis

Detailed CV

Software

Publications

  1. Antipov D. , Bushmanova E. , Dvorkina T. , Gurevich A. , Kunyavskaya O. , Shlemov A., Lapidus A. , Meleshko D. , Nurk S. , Prjibelski A. , Korobeynikov A. SPAdes Family of Tools for Genome Assembly and Analysis (poster), 2019
  2. Shlemov A. , Dvorkina T. , Antipov D. , Nurk S. , Korobeynikov A. Tools for assembly graph analysis via SPAdes toolbox and more (talk), 2019
  3. Korobeynikov A. , Antipov D. , Bushmanova E. , Gurevich A. , Lapidus A. L. , Meleshko D. , Mikheenko A. , Nurk S. , Prjibelski A. , and Pevzner P. A. SPAdes Family of Tools for Genome Assembly and Analysis: Current Status (poster), 2018
  4. Korobeynikov A. , Antipov D. , Bushmanova E. , Gurevich A. , Lapidus A. , Meleshko D. , Mikheenko A. , Nurk S. , Prjibelski A. , Pevzner P. A. SPAdes Family of Tools for Genome Assembly and Analysis: What’s New? (poster), 2018
  5. Korobeynikov A. , Antipov D. , Bankevich A. , Bushmanova E. , Lapidus A. , Meleshko D. , Nurk S. , Prjibelski A. , Pevzner P. A. SPAdes: is there anything new we could develop? (talk), 2017
  6. Nurk S. Past, present and future of metaSPAdes metagenomic assembler (talk), 2017
  7. Nurk S. Assembly of metagenomic (series) data with SPAdes instruments (talk), 2017
  8. Korobeynikov A. , Antipov D. , Bankevich A. , Bushmanova E. , Gurevich A. , Lapidus A. , Meleshko D. , Nurk S. , Prjibelski A. , Pevzner P. A. SPAdes Family of Tools for Genome Assembly and Analysis: What’s New? (poster), 2017
  9. Lapidus A. , Antipov D. , Bankevich A. , Bushmanova E. , Korobeynikov A. , Meleshko D. , Nurk S. , Prjibelski A. , Pevzner P. A. SPAdes Family of Tools for Genome Assembly and Analysis: What’s New? (poster), 2017
  10. Nurk S., Gorshkov Y., Pevzner P.A. Reconstructing individual genomes from multiple metagenomic samples with MTS pipeline. Manuscript in preparation., 2017
  11. Nurk S. An Upper Bound for Circuit SAT. PDMI preprint 10/2009, 2009