Presently finishing my PhD under the supervision of Pavel A. Pevzner.
In 2011 graduated (with honors) from the faculty of Mathematics and Mechanics of Saint-Petersburg State University (Department of Software Engineering)
Genome Assembly, Metagenomics, Computational Genomics, Bioinformatics, Software Design, Algorithms Design, Data Analysis
Detailed CV
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Shlemov A. , Dvorkina T. , Antipov D. , Nurk S. , Korobeynikov A.
Tools for assembly graph analysis via SPAdes toolbox and more (talk),
2019
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Antipov D. , Bushmanova E. , Dvorkina T. , Gurevich A. , Kunyavskaya O. , Shlemov A., Lapidus A. , Meleshko D. , Nurk S. , Prjibelski A. , Korobeynikov A.
SPAdes Family of Tools for Genome Assembly and Analysis (poster),
2019
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Korobeynikov A. , Antipov D. , Bushmanova E. , Gurevich A. , Lapidus A. , Meleshko D. , Mikheenko A. , Nurk S. , Prjibelski A. , Pevzner P. A.
SPAdes Family of Tools for Genome Assembly and Analysis: What’s New? (poster),
2018
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Korobeynikov A. , Antipov D. , Bushmanova E. , Gurevich A. , Lapidus A. L. , Meleshko D. , Mikheenko A. , Nurk S. , Prjibelski A. , and Pevzner P. A.
SPAdes Family of Tools for Genome Assembly and Analysis: Current Status (poster),
2018
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Nurk S., Meleshko D., Korobeynikov A., Pevzner P. A.
metaSPAdes: a new versatile de novo metagenomics assembler. Genome Research,
2017
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Nurk S., Gorshkov Y., Pevzner P.A.
Reconstructing individual genomes from multiple metagenomic samples with MTS pipeline. Manuscript in preparation.,
2017
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Korobeynikov A. , Antipov D. , Bankevich A. , Bushmanova E. , Lapidus A. , Meleshko D. , Nurk S. , Prjibelski A. , Pevzner P. A.
SPAdes: is there anything new we could develop? (talk),
2017
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Lapidus A. , Antipov D. , Bankevich A. , Bushmanova E. , Korobeynikov A. , Meleshko D. , Nurk S. , Prjibelski A. , Pevzner P. A.
SPAdes Family of Tools for Genome Assembly and Analysis: What’s New? (poster),
2017
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Korobeynikov A. , Antipov D. , Bankevich A. , Bushmanova E. , Gurevich A. , Lapidus A. , Meleshko D. , Nurk S. , Prjibelski A. , Pevzner P. A.
SPAdes Family of Tools for Genome Assembly and Analysis: What’s New? (poster),
2017
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Nurk S.
Assembly of metagenomic (series) data with SPAdes instruments (talk),
2017
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Nurk S.
Past, present and future of metaSPAdes metagenomic assembler (talk),
2017
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Guzman G. I., Utrilla J., Nurk S., Brunk E., Monk J. M., Ebrahim A., Palsson B. A., Feist A. M.
Model-driven discovery of underground metabolic functions in Escherichia coli. Proceedings of the National Academy of Sciences,
2015
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Prjibelski A., Vasilinetc I., Bankevich A., Gurevich A., Krivosheeva T., Nurk S., Pham S., Korobeynikov A., Lapidus A., Pevzner P. A.
ExSPAnder: a universal repeat resolver for DNA fragment assembly. Bioinformatics,
2014
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Lin Y., Nurk S., Pevzner P. A.
What is the difference between the breakpoint graph and the de Bruijn graph? BMC Genomics,
2014
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Nurk S., Bankevich A., Antipov D., Gurevich A., Korobeynikov A., Lapidus A., Prjibelski A., Pyshkin A., Sirotkin A., Sirotkin Y., Stepanauskas R., Clingenpeel S. R., Woyke T., Mclean J. S., Lasken R., Tesler G., Alekseyev M. A., Pevzner P. A.
Assembling single-cell genomes and mini-metagenomes from chimeric MDA products. Journal of Computational Biology,
2013
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McLean J. S., Lombardo M.-J., Ziegler M. G., Novotny M., Yee-Greenbaum J., Badger J. H., Tesler G., Nurk S., Lesin V., Brami D., Hall A. P., Edlund A., Allen L. Z., Durkin S., Reed S., Torriani F., Nealson K. H., Pevzner P. A., Friedman R. M., Venter J. C., Lasken R. S.
Genome of the pathogen Porphyromonas gingivalis recovered from a biofilm in a hospital sink using a high-throughput single-cell genomics platform. Genome Research,
2013
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Bankevich A., Nurk S., Antipov D., Gurevich A., Dvorkin M., Kulikov A. S., Lesin V., Nikolenko S., Pham S., Prjibelski A., Pyshkin A., Sirotkin A., Vyahhi N., Tesler G., Alekseyev M. A., Pevzner P. A.
SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing. Journal of Computational Biology,
2012
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Nurk S.
An Upper Bound for Circuit SAT. PDMI preprint 10/2009,
2009
