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Alla Mikheenko , Andrey V Bzikadze, Alexey Gurevich , Karen H Miga, Pavel A Pevzner
TandemTools: mapping long reads and assessing/improving assembly quality in extra-long tandem repeats Bioinformatics,
2020
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Alla Mikheenko , Andrey V Bzikadze, Alexey Gurevich , Karen H Miga, Pavel A Pevzner
TandemTools: mapping long reads and assessing/improving assembly quality in extra-long tandem repeats (talk),
2020
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Andrey D Prjibelski , Alla Mikheenko , Anoushka Joglekar, Dmitry Meleshko , Alla L Lapidus , Hagen Tilgner
IsoQuant: isoform analysis and quantification with long error-prone transcriptomic reads (talk),
2020
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Liu Cao, Alexey Gurevich , Kelsey L Alexander, C. Benjamin Naman, Tiago Leao, Evgenia Glukhov, Nathan A Moss, Tal Luzzatto Knaan, Fernando Vargas, Robby Quinn, Amina Bouslimani, Louis-Felix Nothias, Nitin K Singh, John G Sanders, Rodolfo A S Benitez, Luke R Thompson, Md-Nafiz Hamid, James T Morton, Alla Mikheenko , Alexander Shlemov , Anton Korobeynikov , Iddo Friedberg, Rob Knight, Kasthuri Venkateswaran, William Gerwick, Lena Gerwick, Peter C. Dorrestein, Pavel A. Pevzner , Hosein Mohimani
MetaMiner: A Scalable Peptidogenomics Approach for Discovery of Ribosomal Peptide Natural Products with Blind Modifications from Microbial Communities Cell Systems,
2019
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Alla Mikheenko, Mikhail Kolmogorov
Assembly Graph Browser: interactive visualization of assembly graphs Bioinformatics,
2019
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Antipov D. , Bushmanova E. , Dvorkina T. , Gurevich A. , Kunyavskaya O. , Shlemov A., Lapidus A. , Meleshko D. , Nurk S. , Prjibelski A. , Korobeynikov A.
SPAdes Family of Tools for Genome Assembly and Analysis (poster),
2019
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Alla Mikheenko, Andrey Prjibelski, Vladislav Saveliev, Dmitry Antipov, Alexey Gurevich
Versatile genome assembly evaluation with QUAST-LG Bioinformatics,
2018
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Hosein Mohimani, Alexey Gurevich, Alexander Shlemov, Alla Mikheenko, Anton Korobeynikov, Liu Cao, Egor Shcherbin, Louis-Felix Nothias, Pieter Dorrestein, Pavel Pevzner
Dereplication of Microbial Metabolites Through Database Search of Mass Spectra Nature Communications,
2018
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Mikheenko A. , Prjibelski A. , Saveliev V. , Antipov D. , Gurevich A.
Versatile genome assembly evaluation with QUAST-LG (talk, poster),
2018
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Gurevich A. , Mikheenko A. , Shlemov A. , Korobeynikov A. , Pevzner P. A.
Variable Identification and De Novo Sequencing of Cyclopeptides via Computational Processing of Tandem Mass Spectra (talk),
2018
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Korobeynikov A. , Antipov D. , Bushmanova E. , Gurevich A. , Lapidus A. , Meleshko D. , Mikheenko A. , Nurk S. , Prjibelski A. , Pevzner P. A.
SPAdes Family of Tools for Genome Assembly and Analysis: What’s New? (poster),
2018
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Korobeynikov A. , Antipov D. , Bushmanova E. , Gurevich A. , Lapidus A. L. , Meleshko D. , Mikheenko A. , Nurk S. , Prjibelski A. , and Pevzner P. A.
SPAdes Family of Tools for Genome Assembly and Analysis: Current Status (poster),
2018
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Hosein Mohimani, Alexey Gurevich, Alla Mikheenko, Neha Garg, Louis-Felix Nothias, Akihiro Ninomiya, Kentaro Takada, Pieter C Dorrestein, and Pavel A. Pevzner
Dereplication of peptidic natural products through database search of mass spectra. Nature Chemical Biology,
2017
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Gurevich A. , Shlemov A., Mikheenko A. , Korobeynikov A. , Pevzner P. A.
VarQuest: modification-tolerant identification of novel variants of peptidic antibiotics and other natural products. (poster),
2017
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Gurevich A. , Shlemov A., Mikheenko A. , Korobeynikov A. , Pevzner P. A.
Identification of novel peptidic antibiotics via large scale scoring of mass spectra against natural products databases (poster),
2017
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Mikheenko A., Valin G., Prjibelski A., Saveliev V., Gurevich A.
Icarus: visualizer for de novo assembly evaluation. Bioinformatics,
2016
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Mikheenko A., Saveliev V., Gurevich A.
MetaQUAST: evaluation of metagenome assemblies. Bioinformatics,
2016
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Hosein Mohimani, Alexey Gurevich, Alla Mikheenko, Neha Garg, Louis-Felix Nothias, Akihiro Ninomiya, Kentaro Takada, Pieter C. Dorrestein, Pavel A. Pevzner
Dereplication of Peptidic Natural Products Through Database Search of Mass Spectra. Nature Chemical Biology,
2016