Sergey Nurk

Junior Research Fellow

Education:

Saint-Petersburg Academic University, a PhD student, present time
SPbSU, Department of Software Engineering, 2011 (with honors)

Scientific interests:

Algorithms Design, Computational Genomics, Bioinformatics, Software Design, Data Analysis

Detailed CV

Software

Publications

  1. Nurk S., Pevzner P. A. SPArcle: Identifying Microbial Genome Variations with Colored de Bruijn Graphs. Manuscript in preparation., 2016
  2. Guzman G. I., Utrilla J., Nurk S., Brunk E., Monk J. M., Ebrahim A., Palsson B. A., Feist A. M. Model-driven discovery of underground metabolic functions in Escherichia coli. Accepted to PNAS., 2016
  3. Nurk S., Meleshko D., Korobeynikov A., Pevzner P. A. metaSPAdes: a new versatile de novo metagenomics assembler. arXiv preprint, 2016
  4. Lapidus A., Antipov D., Bankevich A., Gurevich A., Korobeynikov A., Nurk S., Prjibelski A., Safonova Y., Vasilinetc I., Pevzner P. A. New Frontiers of Genome Assembly with SPAdes 3.0. (poster), 2014
  5. Nurk S., Bankevich A., Antipov D., Gurevich A., Korobeynikov A., Lapidus A., Prjibelski A., Pyshkin A., Sirotkin A., Sirotkin Y., Stepanauskas R., McLean J., Lasken R., Clingenpeel S., Woyke T., Tesler G., Alekseyev M. A., Pevzner P. A. Assembling Genomes and Mini-metagenomes from Highly Chimeric Reads. Lecture Notes in Computer Science, 2013
  6. Prjibelski A., Krivosheeva T., Bankevich A., Nurk S., Pham S., Pevzner P. A. Path-Extend: An Approach for Repeat Resolution in de novo Genome Assembly. , 2012
  7. Nikolenko S., Nurk S., Bankevich A., Alekseyev M. A., Pevzner P. A. Expandable de novo genome assembler for short-read sequence data. (HiTSeq poster), 2011
  8. Nurk S. An Upper Bound for Circuit SAT. PDMI preprint 10/2009, 2009