2009 – current: PhD student, St. Petersburg State University, Mathematics & Mechanics Faculty, Department of Computer Science.
2003 – 2009: St. Petersburg State University, Mathematics & Mechanics Faculty, Department of Algebra (diploma thesis: “Reducibility for disjoint NP-pairs with advice”).
2010 – sllver medal on ACM ICPC World Finals.
2009, 2004 – 6th place on NorthEastern European Regional Contest.
2004, 2005, 2009 – SPbSU programming contests champion.
2008: junior software engineer (intern), JetBrains.
2009 – 2010: junior software engineer (intern) Yandex.
2010 – 2011: (junior) software engineer, Vkontakte.
structural complexity theory,
effective algorithms,
paired de Bruijn graphs,
genome assemblers.
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Dmitry Antipov , Mikhail Raiko , Alla Lapidus , and Pavel A. Pevzner
Plasmid detection and assembly in genomic and metagenomic data sets Genome Research,
2019
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Elena Bushmanova, Dmitry Antipov, Alla Lapidus, Andrey D Prjibelski
rnaSPAdes: a de novo transcriptome assembler and its application to RNA-Seq data GigaScience,
2019
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Shlemov A. , Dvorkina T. , Antipov D. , Nurk S. , Korobeynikov A.
Tools for assembly graph analysis via SPAdes toolbox and more (talk),
2019
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Antipov D. , Rayko M. , Lapidus A. L. , Korobeynikov A.
metaplasmidSPAdes: Plasmid Detection and Assembly in Genomic and Metagenomic Datasets (talk),
2019
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Alla Mikheenko, Andrey Prjibelski, Vladislav Saveliev, Dmitry Antipov, Alexey Gurevich
Versatile genome assembly evaluation with QUAST-LG Bioinformatics,
2018
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Antipov D.
Plasmid Detection and Assembly in Genomic and Metagenomic Datasets (talk),
2018
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Korobeynikov A. , Antipov D. , Bushmanova E. , Gurevich A. , Lapidus A. L. , Meleshko D. , Mikheenko A. , Nurk S. , Prjibelski A. , and Pevzner P. A.
SPAdes Family of Tools for Genome Assembly and Analysis: Current Status (poster),
2018
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Korobeynikov A. , Antipov D. , Bankevich A. , Bushmanova E. , Lapidus A. , Meleshko D. , Nurk S. , Prjibelski A. , Pevzner P. A.
SPAdes: is there anything new we could develop? (talk),
2017
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Lapidus A. , Antipov D. , Bankevich A. , Bushmanova E. , Korobeynikov A. , Meleshko D. , Nurk S. , Prjibelski A. , Pevzner P. A.
SPAdes Family of Tools for Genome Assembly and Analysis: What’s New? (poster),
2017
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Korobeynikov A. , Antipov D. , Bankevich A. , Bushmanova E. , Gurevich A. , Lapidus A. , Meleshko D. , Nurk S. , Prjibelski A. , Pevzner P. A.
SPAdes Family of Tools for Genome Assembly and Analysis: What’s New? (poster),
2017
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Antipov D., Korobeynikov A., McLean J. S., Pevzner P. A.
hybridSPAdes: an algorithm for hybrid assembly of short and long reads. Bioinformatics,
2016
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Bushmanova E., Antipov D., Lapidus A., Suvorov V., Prjibelski A.
rnaQUAST: a quality assessment tool for de novo transcriptome assemblies. Bioinformatics,
2016
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Antipov D., Hartwick N., Shen M., Raiko M., Lapidus A., Pevzner P. A.
plasmidSPAdes: Assembling Plasmids from Whole Genome Sequencing Data. Bioinformatics,
2016
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Lapidus A., Antipov D., Bankevich A., Gurevich A., Korobeynikov A., Nurk S., Prjibelski A., Safonova Y., Vasilinetc I., Pevzner P. A.
New Frontiers of Genome Assembly with SPAdes 3.0. (poster),
2014
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Nurk S., Bankevich A., Antipov D., Gurevich A., Korobeynikov A., Lapidus A., Prjibelski A., Pyshkin A., Sirotkin A., Sirotkin Y., Stepanauskas R., Clingenpeel S. R., Woyke T., Mclean J. S., Lasken R., Tesler G., Alekseyev M. A., Pevzner P. A.
Assembling single-cell genomes and mini-metagenomes from chimeric MDA products. Journal of Computational Biology,
2013
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Pham S., Antipov D., Sirotkin A., Tesler G., Pevzner P. A., Alekseyev M. A.
Pathset Graphs: A Novel Approach for Comprehensive Utilization of Paired Reads in Genome Assembly. Journal of Computational Biology,
2013
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Nurk S., Bankevich A., Antipov D., Gurevich A., Korobeynikov A., Lapidus A., Prjibelski A., Pyshkin A., Sirotkin A., Sirotkin Y., Stepanauskas R., McLean J., Lasken R., Clingenpeel S., Woyke T., Tesler G., Alekseyev M. A., Pevzner P. A.
Assembling Genomes and Mini-metagenomes from Highly Chimeric Reads. Lecture Notes in Computer Science,
2013
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Antipov D., Krasheninnikova K., Pevzner P. A.
Using uneven coverage depth in bacterial single-cell repeat resolution. (poster),
2013
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Bankevich A., Nurk S., Antipov D., Gurevich A., Dvorkin M., Kulikov A. S., Lesin V., Nikolenko S., Pham S., Prjibelski A., Pyshkin A., Sirotkin A., Vyahhi N., Tesler G., Alekseyev M. A., Pevzner P. A.
SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing. Journal of Computational Biology,
2012
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Pham S., Antipov D., Sirotkin A., Tesler G., Pevzner P. A., Alekseyev M. A.
Pathset Graphs: A Novel Approach for Comprehensive Utilization of Mate-Pairs in Genome Assembly. Lecture Notes in Computer Science,
2012
