Anton Bankevich

Junior Research Fellow

Education:

2006-2008 Academy of Modern Software Engineering.
2004-2009 St. Petersburg State University, Mathematics & Mechanics Faculty, Department of Algebra.
2009-2012 PhD student, St. Petersburg State University, Mathematics & Mechanics Faculty, Department of Algebra.

Teaching experience:

2003-2007 Conducted classes in Olympiad Mathematics for school students at specialized school #533, St. Petersburg.
2008, 2010 Conducted classes in Mathematics for students at St. Petersburg State University.

Awards:

2004 the second award on All-Russian Math Olympiad.
2008 the second award on ACM North-Eastern region semifinal.

Scientific interests:

bioinformatics, graph theory, algebra, computer science

Software

Publications

  1. Lapidus A., Antipov D., Bankevich A., Gurevich A., Korobeynikov A., Nurk S., Prjibelski A., Safonova Y., Vasilinetc I., Pevzner P. A. New Frontiers of Genome Assembly with SPAdes 3.0. (poster), 2014
  2. Safonova Y., Bankevich A., Pevzner P. A. dipSPAdes: assembler for highly polymorphic diploid genomes. In Sharan, Roded (eds.) RECOMB 2014, LNCS (8394). pp. 265-279. Springer, Heidelberg, 2014
  3. Safonova Y., Bankevich A., Pevzner P. A. dipSPAdes: assembler for highly polymorphic diploid genomes. Talk., 2014
  4. Nurk S., Bankevich A., Antipov D., Gurevich A., Korobeynikov A., Lapidus A., Prjibelski A., Pyshkin A., Sirotkin A., Sirotkin Y., Stepanauskas R., McLean J., Lasken R., Clingenpeel S., Woyke T., Tesler G., Alekseyev M. A., Pevzner P. A. Assembling Genomes and Mini-metagenomes from Highly Chimeric Reads. Lecture Notes in Computer Science, 2013
  5. Safonova Y., Kondrashov A., Logacheva M., Penin A., Bankevich A. NGS assembly of highly polymorphic diploid genomes. , 2013
  6. Prjibelski A., Krivosheeva T., Bankevich A., Nurk S., Pham S., Pevzner P. A. Path-Extend: An Approach for Repeat Resolution in de novo Genome Assembly. , 2012
  7. Nikolenko S., Nurk S., Bankevich A., Alekseyev M. A., Pevzner P. A. Expandable de novo genome assembler for short-read sequence data. (HiTSeq poster), 2011